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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137551309_137552324_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137551309 - 137552324
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
CTATTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATAAATT
Flanking Amino Acid:
NDYNPIFDIEDLENDTGFQQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.7
0.69
0.8
73.5
36.8
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
48.6
-0
2.1
75.06
41.5

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808