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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137552388_137553589_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137552388 - 137553589
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CAGTTGTTCATT
Flanking Amino Acid:
VRTSHGRRPPVTAKIPSTSA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.2
0.72
0.7
77.5
24.4
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
43.7
-0.4
2.3
59.55
44.8

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808