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Intron Name: Anas_platyrhynchos_platyrhynchos_1_137556106_137556181_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137556106 - 137556181

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTAATTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TATTTTACAAAT

Flanking Amino Acid:

AAGYTKAAMRGSSFDPLGQA

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

79.7

36.4

Major BPS

84.4

0.85

34.5

Major PPT

79.9

0.67

0.9

73.3

41.5

Minor 5ss

41.6

-0.9

3.6

64.2

47.3

Minor BPS

48.4

-0

1.8

71.5

Associated Gene:

Gene:

IFT88

Ensembl Gene ID:

ENSAPLG00000002720

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002830

137550154 - 137596961

46808