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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137556252_137556842_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137556252 - 137556842
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
APPLEMKNPDSSEEKIKQLE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808