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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137561926_137562460_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137561926 - 137562460
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
NDSLRQMERERKSKAEEYIM
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.8
38.2
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
87.5
0.84
0.6
88.2
21.6
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808