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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137562548_137565221_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137562548 - 137565221
Intron Length:
2674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCA
Flanking Amino Acid:
IETSFAAGYDWCVEVVKASH
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
61.9
0.37
2
78.76
38.3

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808