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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137569599_137570175_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137569599 - 137570175
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAACCTTTATTT
Flanking Amino Acid:
SSCTEALYNLGLTYKKLNRL
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
65.4
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.7
84.8
29.6
Minor 5ss
37.7
-1.4
3.1
48.3
47.3
Minor BPS
57.8
0.32
1.6
71.51
39.5

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808