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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137572419_137573569_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137572419 - 137573569
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
CCTATTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
GTTTCTTTCACC
Flanking Amino Acid:
KSQAFHYYYESYRYFPSNIE
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
78.3
0.7
1
80
32.1
Major PPT
76.2
0.59
1
76.1
37.8
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
69.7
0.6
1.7
78.83
36.8

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808