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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137573686_137577436_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137573686 - 137577436
Intron Length:
3751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TATTTATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
IEYFERAELILPTQVKWPLM
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
1
74
40.3
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808