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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137579010_137580758_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137579010 - 137580758
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTCTAACA
Flanking Amino Acid:
IHRKFPENVECLQFLVRLCT
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.6
0.4
1
67.8
38
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
63.7
0.43
1.7
75.11
36.7

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808