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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137580866_137585034_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137580866 - 137585034
Intron Length:
4169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TCTTTCCAAACC
Flanking Amino Acid:
VEKLKEIREQRIKSGRDGSA
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.7
0.56
0.9
65.2
40.9
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
53.8
0.1
2
70.2
41.5

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808