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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137594261_137596362_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
137594261 - 137596362
Intron Length:
2102

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTAAACCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTTGCTTAAACC
Flanking Amino Acid:
PYESSSSKEIDAAYIDPLGP
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.7
81.3
35.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
58.9
0.2
0.9
48.7
39.2
Minor 5ss
21.8
-3.3
3.8
31.5
42.8
Minor BPS
58.7
0.25
1.8
69.26
43

Associated Gene:

Gene:
IFT88
Ensembl Gene ID:
ENSAPLG00000002720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002830
137550154 - 137596961
46808