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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137602545_137611281_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137602545 - 137611281
Intron Length:
8737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
NMRSASPWAYRISYDPTRYP
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.5
0.64
0.8
73.9
31.3
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
IL17D
Ensembl Gene ID:
ENSAPLG00000027941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042024
137602119 - 137612541
10423