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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137618881_137620416_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137618881 - 137620416
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
ATTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTCTCACCA
Flanking Amino Acid:
LTKGKILLCTGAVMEEQAAK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.1
0.75
0.9
77.8
36
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
57.5
0.23
1.8
72
40

Associated Gene:

Gene:
EEF1AKMT1
Ensembl Gene ID:
ENSAPLG00000003163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003217
137618753 - 137622467
3715