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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137620524_137620616_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137620524 - 137620616
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATGACAG
5'SS Class:
major
3'SS Sequence:
TCCTGCCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ACCCTTTGAACT
Flanking Amino Acid:
DDKDFSVVILDFDIVIADPP
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.1
48.9
41.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
67.5
0.39
0.9
61
34.2
Minor 5ss
38.7
-1.3
3
44
44.4
Minor BPS
52
0.14
1.4
63.81
40.8

Associated Gene:

Gene:
EEF1AKMT1
Ensembl Gene ID:
ENSAPLG00000003163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022318
137619671 - 137622479
2809