About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137620698_137621380_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137620698 - 137621380
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAAATCAAAT
Flanking Amino Acid:
EAIVAAGKGGRIACVSAPSV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
80.7
31.3
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
44.8
-0.3
2
66.47
42.7

Associated Gene:

Gene:
EEF1AKMT1
Ensembl Gene ID:
ENSAPLG00000003163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022318
137619671 - 137622479
2809
ENSAPLT00000003217
137618753 - 137622467
3715