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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137641840_137642608_R

Intron Information:

Intron Rank:
20
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
137641840 - 137642608
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGCCTGTTACCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTCTTTAATG
Flanking Amino Acid:
LMYSLELGMSSMSSEVCQLC
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.5
0.44
1
61.9
43.3
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
72.8
0.58
1.3
69.25
38.3

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741