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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137642740_137643678_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137642740 - 137643678
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
LPLMSQDLLKFPSLCNQYYK
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741