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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137645560_137646490_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137645560 - 137646490
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTGTTATCT
Flanking Amino Acid:
AHKQICYLGEAKAMNLYEAC
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.5
0.53
0.9
65.1
40.9
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
53.8
0.2
2.3
78.81
43.9

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741