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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137648112_137649054_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137648112 - 137649054
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATC
Flanking Amino Acid:
LLVTLVERRERANLVIQCEN
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
73.5
38.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.8
0.62
0.7
69.7
31
Minor 5ss
41
-1
2.8
53.5
43.7
Minor BPS
87.5
1.16
0.8
90.01
23.7

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741