Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137652729_137654015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137652729 - 137654015

Intron Length:

1287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATGTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAATG

Flanking Amino Acid:

EDIHWLILVTGYLLANDTQG

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

22.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

67.3

0.39

1.2

73.6

Minor 5ss

-2.1

3.1

39.9

46.1

Minor BPS

0.52

1.3

69.97

38.4

Associated Gene:

Gene:

XPO4

Ensembl Gene ID:

ENSAPLG00000003203

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003342

137639106 - 137692846

53741