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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137654162_137654273_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137654162 - 137654273
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATTATT
Flanking Amino Acid:
AAEHCIPLLTSLLEDRVTRL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
0.9
72.5
37.8
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
49.5
0.05
1.8
73.1
38.4

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741