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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137654417_137656532_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
137654417 - 137656532
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
GAAATAACATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTTGAAAT
Flanking Amino Acid:
LAAPDGTRNLTANGVASREE
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68
42.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
51.4
0.03
1.1
46.6
44.4
Minor 5ss
40.7
-1
3.1
55
43.2
Minor BPS
57.7
0.32
2
82.05
39.3

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741