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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137661878_137664280_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
137661878 - 137664280
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
CGCTTCCTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTATTATTAACT
Flanking Amino Acid:
DSRVMELFFTVHRKIREDTD
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
57.7
0.17
1.1
59
36.2
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
69.2
0.68
1.6
82.89
37.5

Associated Gene:

Gene:
XPO4
Ensembl Gene ID:
ENSAPLG00000003203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003342
137639106 - 137692846
53741