About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137664376_137672405_R


Intron Information:

Intron Rank:
6

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
137664376 - 137672405

Intron Length:
8030

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
CAG|GCCTTTTAT

5'SS Class:
major

3'SS Sequence:
AGACATTATATAG|C

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
ACATTAT

U12 Branch Point Sequence:
TTGACCTTGACA

Flanking Amino Acid:
LPPNYILSISAMFESSQNVM

Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.7
0.39
1.3
60.4
40.9

Major BPS
63.3
0.33
1.1
54
41.2

Major PPT
58.3
0.19
1
51.1
42.1

Minor 5ss
33.1
-1.9
3.8
49.7
46.5

Minor BPS
75.6
0.8
1.2
79.4
36.7

Associated Gene:

Gene:
XPO4

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

137639106 - 137692846
53741