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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137745384_137768636_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137745384 - 137768636
Intron Length:
23253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTGCCATTCACC
Flanking Amino Acid:
QELVNAGCDQEMAVRALKQT
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.5
40.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.1
0.61
1
72.7
37.5
Minor 5ss
35
-1.7
2.8
43.3
43.8
Minor BPS
48.7
-0.1
2.1
62.03
42.8

Associated Gene:

Gene:
LATS2
Ensembl Gene ID:
ENSAPLG00000006486
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006728
137732857 - 137769216
36360