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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137809502_137810386_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137809502 - 137810386
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCACTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCCTCCTCCACT
Flanking Amino Acid:
DLHGEIRTLKEDINASLGKS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
64.8
0.33
1
64
30.1
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
57.3
0.31
2
75.75
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019957
137806470 - 137810464
3995