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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137832464_137857776_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
137832464 - 137857776
Intron Length:
25313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CTTGGAACTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTAAG
U12 Branch Point Sequence:
TTCCTTGGAACT
Flanking Amino Acid:
YYAYVVELCLLGHKVIIVLI
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
58.8
40.4
Major BPS
50.1
0
1.6
61.7
43.1
Major PPT
48.8
-0
1.7
55.9
43.7
Minor 5ss
29.5
-2.3
3.1
33.4
41.6
Minor BPS
47
-0.1
2.1
69.31
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045393
137827819 - 137859807
31989