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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137871789_137872073_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137871789 - 137872073
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTACA
5'SS Class:
major
3'SS Sequence:
TTTGATTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
AATTCTTTGATT
Flanking Amino Acid:
NVKDRFEAGENISLEEFKTF
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
72.7
38.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
78.3
0.64
0.9
70.5
40.9
Minor 5ss
31
-2.2
2.7
35.2
40.7
Minor BPS
73.7
0.83
1.1
81.83
33.3

Associated Gene:

Gene:
MICU2
Ensembl Gene ID:
ENSAPLG00000008715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009098
137868341 - 137931055
62715