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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137880708_137889497_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137880708 - 137889497
Intron Length:
8790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
KTAGDETVFQGAELESCDVN
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
77
36.6
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
MICU2
Ensembl Gene ID:
ENSAPLG00000008715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009098
137868341 - 137931055
62715