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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137894060_137898001_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137894060 - 137898001
Intron Length:
3942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACTT
Flanking Amino Acid:
EYLFLLTILTKPQTGFKIAF
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78
0.63
0.9
72.2
37.5
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
48.8
-0
2
76.59
40.4

Associated Gene:

Gene:
MICU2
Ensembl Gene ID:
ENSAPLG00000008715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009098
137868341 - 137931055
62715