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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138055682_138074264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138055682 - 138074264
Intron Length:
18583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
AGCTCCTTACCA
Flanking Amino Acid:
MNEKGELYGSEKLTQECVFR
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
65.4
0.48
1.7
70.44
41.7

Associated Gene:

Gene:
FGF9
Ensembl Gene ID:
ENSAPLG00000010854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011298
138049018 - 138074510
25493