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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138101994_138102080_R

Intron Information:

Intron Rank:
141175
Intron Class:
major
Intron Phase:
Intron Coordinates:
138101994 - 138102080
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTAACCACATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.3
0.59
0.8
68
32.1
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
45.9
-0.3
2
62.94
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023290
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028641
138101801 - 138102489
689