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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138180955_138181213_F

Intron Information:

Intron Rank:
130338
Intron Class:
major
Intron Phase:
Intron Coordinates:
138180955 - 138181213
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTATCAGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
78.7
0.65
0.9
73.1
37.4
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
50.1
-0.1
2.3
65.41
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020112
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043494
138180922 - 138184703
3782