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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138245761_138246383_F

Intron Information:

Intron Rank:
135128
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
138245761 - 138246383
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
AGG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATTGCTGTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.4
32.4
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
49.4
-0
3.2
85.1
29.7
Minor 5ss
40.1
-1.1
2.8
44.3
43.6
Minor BPS
45.8
-0.4
2.2
57.19
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022706
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033716
138243285 - 138246467
3183