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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138277067_138278222_F

Intron Information:

Intron Rank:
124052
Intron Class:
major
Intron Phase:
Intron Coordinates:
138277067 - 138278222
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGCTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
TGCATATTAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
62.3
39.3
Major BPS
59
0.23
1.2
55
42.7
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
46.1
-0.4
2.9
59.7
45.1
Minor BPS
45.1
-0.3
1.8
52.55
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026099
138276903 - 138279181
2279
ENSAPLT00000033231
138276903 - 138279181
2279