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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138278280_138278383_F

Intron Information:

Intron Rank:
124054
Intron Class:
major
Intron Phase:
Intron Coordinates:
138278280 - 138278383
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTATTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
70.6
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.2
0.79
0.9
80.7
35.9
Minor 5ss
43.7
-0.7
2.6
56.3
42.5
Minor BPS
60.6
0.42
1.9
81.15
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033231
138276903 - 138279181
2279