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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138423686_138425311_F

Intron Information:

Intron Rank:
131909
Intron Class:
major
Intron Phase:
Intron Coordinates:
138423686 - 138425311
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATTCCAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
49.7
-0
1.9
64.31
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021117
138423621 - 138457607
33987