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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138425667_138428542_R

Intron Information:

Intron Rank:
137544
Intron Class:
major
Intron Phase:
Intron Coordinates:
138425667 - 138428542
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
60.1
0.4
1.8
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021494
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022699
138425610 - 138433689
8080