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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138567267_138568897_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138567267 - 138568897
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATCTCCTGATTC
Flanking Amino Acid:
ECDSCAGLGTASSTQSEPAG
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.2
0.66
0.9
72.5
37.1
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
55.3
0.14
1.7
65.52
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837