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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138569017_138570314_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138569017 - 138570314
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GTTGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTGCTCACCA
Flanking Amino Acid:
AQGREQAEEEGPWYLLLCSS
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77.7
0.62
0.9
69.5
41.6
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
45.9
-0.3
2.2
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837