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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138571067_138571154_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138571067 - 138571154
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CAGCACTCACAC
Flanking Amino Acid:
QAWFHRGCIQQQAFHAGLLC
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
66
38.4
Major BPS
64.9
0.37
1
67
29.8
Major PPT
81.2
0.7
0.7
75.8
26.2
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
38
-0.9
1.8
39.74
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837