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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138571847_138572127_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138571847 - 138572127
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TGTCCCTGAGAT
Flanking Amino Acid:
QRVVKQATRKMCYICGERGA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
79.2
0.66
0.9
73
37.3
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
51.4
0.12
1.8
73.38
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837