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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138572230_138572419_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138572230 - 138572419
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAGAA
U12 Branch Point Sequence:
ACCCACCTAAGA
Flanking Amino Acid:
HGLCTHENSLHLASGLSSKQ
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
48.4
-0.1
1.1
44.7
36.9
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
42.3
-0.5
2
48.81
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837