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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138572512_138572619_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138572512 - 138572619
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
TGCTCAGTGATT
Flanking Amino Acid:
KRRAPDTREKVCVLCNRADE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
84.7
0.78
0.7
76.8
31.9
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
47
-0.1
2.3
68.68
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013344
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013888
138565985 - 138572821
6837