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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138728131_138754953_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
138728131 - 138754953
Intron Length:
26823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAC
Flanking Amino Acid:
LDFYSVNLTNQMVREQYTTT
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
82.6
30.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84
0.76
0.8
80.4
30.5
Minor 5ss
66.3
0.55
2.2
79.9
33.6
Minor BPS
66.9
0.51
1.7
79.08
36.2

Associated Gene:

Gene:
SGCG
Ensembl Gene ID:
ENSAPLG00000013021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046735
138727720 - 138816136
88417