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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138729103_138754953_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
138729103 - 138754953
Intron Length:
25851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
84
0.76
0.8
80.4
30.5
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
66.9
0.51
1.7
79.08
36.2

Associated Gene:

Gene:
SGCG
Ensembl Gene ID:
ENSAPLG00000013021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023119
138728634 - 138816408
87775