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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138755152_138770824_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138755152 - 138770824
Intron Length:
15673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CAATACTAAAAT
Flanking Amino Acid:
WILKVMWFSPTGMGHLRVTK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
85.6
0.8
0.6
84.7
23.1
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
48.1
-0
2
64.53
45

Associated Gene:

Gene:
SGCG
Ensembl Gene ID:
ENSAPLG00000013021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046735
138727720 - 138816136
88417
ENSAPLT00000023119
138728634 - 138816408
87775
ENSAPLT00000017868
138728634 - 138816408
87775
ENSAPLT00000013582
138727100 - 138816408
89309
ENSAPLT00000048385
138727100 - 138816136
89037