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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138789100_138797408_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138789100 - 138797408
Intron Length:
8309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ACTTTTGTAATA
Flanking Amino Acid:
VIGTDKLRVTGPEGALFEHS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
77.1
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.3
0.88
0.6
87.7
22.4
Minor 5ss
37.5
-1.4
2.4
42.6
44.3
Minor BPS
51.7
0.05
2
64.17
37.3

Associated Gene:

Gene:
SGCG
Ensembl Gene ID:
ENSAPLG00000013021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046735
138727720 - 138816136
88417
ENSAPLT00000023119
138728634 - 138816408
87775
ENSAPLT00000017868
138728634 - 138816408
87775
ENSAPLT00000013582
138727100 - 138816408
89309
ENSAPLT00000048385
138727100 - 138816136
89037