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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138797482_138815393_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138797482 - 138815393
Intron Length:
17912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
GTGCTCCTATCA
Flanking Amino Acid:
LVKAEAFKQLRLESPTRSLS
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
85.9
0.81
0.8
83.8
31.2
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
46.4
-0.2
1.9
58.05
41.2

Associated Gene:

Gene:
SGCG
Ensembl Gene ID:
ENSAPLG00000013021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046735
138727720 - 138816136
88417
ENSAPLT00000023119
138728634 - 138816408
87775
ENSAPLT00000017868
138728634 - 138816408
87775
ENSAPLT00000013582
138727100 - 138816408
89309
ENSAPLT00000048385
138727100 - 138816136
89037